Details of RNA Modification Site of hg38
mod ID m6A_site_472688 mod Site chr2:54623495-54623496:+
mod Type m6A Sequence TAGATTTACTGAGAAGGGGAACTTGGAAGTGCTGCTCTTCA
Motif Score 3.37338095238095
RNA Structure Motif .((((...(((.....)))...)))).....
 MFE -3.90
Support Dataset Num 5 Support sub-Dataset Num 8
Support Dataset List
Support sub-Dataset List

GSM2739502, GSM2739503, GSM2884195, GSM2884197, GSM2884199, GSM1908206, GSM2203048, GSM2464931
Cell/Tissue List HeLa, CD34, MT4, Huh7, HEC-1-A
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000356805.9,ENST00000615901.4,ENST00000389980.7,ENST00000333896.5
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000356805.9ENSG00000115306.16SPTBN1protein_codingcds-10
ENST00000615901.4ENSG00000115306.16SPTBN1protein_codingcds-10
ENST00000389980.7ENSG00000115306.16SPTBN1protein_codingcds-10
ENST00000333896.5ENSG00000115306.16SPTBN1protein_codingcds-9
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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