| mod ID | m6A_site_472839 | mod Site | chr2:54664563-54664564:+ | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
CCTCTGATCGTAAAGCCAAGACTGCCCTCCCAGCCCAGAGT |
||||||||||||||||||
| Motif Score | 3.31938095238095 | ||||||||||||||||||||
| RNA Structure Motif |
................(((......)))... |
MFE | -0.60 | ||||||||||||||||||
| Support Dataset Num | 12 | Support sub-Dataset Num | 36 | ||||||||||||||||||
| Support Dataset List | |||||||||||||||||||||
| Support sub-Dataset List |
GSM2739502, GSM2739503, GSM2884195, GSM2884197, GSM2884199, GSM2987447, GSM3396437, GSM3396438, GSM908331, GSM1908206, GSM1908208, GSM1908212, GSM1982263, GSM2010454, GSM2010456, GSM2203043, GSM2203044, GSM2203047, GSM2203048, GSM2203051, GSM2203055, GSM2203056, GSM2203059, GSM2283212, GSM2283215, GSM2332990, GSM2464905, GSM2464907, GSM2464909, GSM2464911, GSM2464913, GSM2464915, GSM2464917, GSM2464919, GSM2464923, GSM2464931 |
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| Cell/Tissue List |
HeLa, CD34, HepG2, HEK293T, MT4, H1299, MM6, Huh7, Jurkat, CD4T, endometrial, HEC-1-A |
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| Seq Type List | m6A-seq,MeRIP-seq | ||||||||||||||||||||
| Transcript ID List | ENST00000356805.9,ENST00000615901.4,ENST00000467371.1 | ||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | susScr11:m6A_site_84959 | ||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||||||||||||
| Writer Catalysis Detail | na | ||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1