| mod ID | m6A_site_472855 | mod Site | chr2:54668569-54668570:+ | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
TTTTTGGCAAAAAGAAATGAACTCCTTTCCTTCACCTCCTG |
||||||||||||||||||
| Motif Score | 3.37338095238095 | ||||||||||||||||||||
| RNA Structure Motif |
............................... |
MFE | 0.00 | ||||||||||||||||||
| Support Dataset Num | 16 | Support sub-Dataset Num | 51 | ||||||||||||||||||
| Support Dataset List | |||||||||||||||||||||
| Support sub-Dataset List |
GSM2739502, GSM2739503, GSM2739507, GSM2739522, GSM2739523, GSM2884195, GSM2884197, GSM2884199, GSM2987447, GSM3396437, GSM3396438, GSM4024128, GSM928401, GSM1135020, GSM1135021, GSM1135032, GSM1272358, GSM1272362, GSM1272364, GSM1272366, GSM1339395, GSM1339401, GSM1339403, GSM1339405, GSM1339407, GSM1339425, GSM1339427, GSM1339429, GSM1828594, GSM1828596, GSM2010456, GSM2203043, GSM2203044, GSM2203047, GSM2203051, GSM2203055, GSM2203056, GSM2203059, GSM2283210, GSM2283211, GSM2283212, GSM2283213, GSM2464905, GSM2464909, GSM2464911, GSM2464917, GSM2464919, GSM2464931, GSM2564019, GSM2564022, GSM2602072 |
||||||||||||||||||||
| Cell/Tissue List |
HeLa, CD34, HepG2, HEK293T, H1A, H1B, hESCs, fibroblasts, A549, CD8T, MM6, Huh7, Jurkat, endometrial, HEC-1-A, NB4, AML |
||||||||||||||||||||
| Seq Type List | m6A-seq,MeRIP-seq,DART-seq,m6A-CLIP/IP,miCLIP | ||||||||||||||||||||
| Transcript ID List | ENST00000467371.1,ENST00000356805.9,ENST00000615901.4 | ||||||||||||||||||||
| Transcript Detail |
|
||||||||||||||||||||
| Conserved Sites | mm10:m6A_site_82248;panTro5:m6A_site_41062 | ||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||||||||||||
| Writer Catalysis Detail | na | ||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1