| mod ID | m6A_site_476226 | mod Site | chr2:65432381-65432382:- | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
CCCCCCGGGGGCGACCCCGGACTGAGCCCCCCCACCCGCGG |
|||||||||||||
| Motif Score | 4.06504166666667 | |||||||||||||||
| RNA Structure Motif |
.((((((.............))))))..... |
MFE | -13.20 | |||||||||||||
| Support Dataset Num | 10 | Support sub-Dataset Num | 31 | |||||||||||||
| Support Dataset List | ||||||||||||||||
| Support sub-Dataset List |
GSM2739523, GSM2987448, GSM3396437, GSM3396438, GSM3582046, GSM3582047, GSM3582052, GSM3582053, GSM3582054, GSM1166139, GSM1166140, GSM1166142, GSM1166143, GSM1166144, GSM2010456, GSM2283211, GSM2332987, GSM2332988, GSM2417477, GSM2417479, GSM2460352, GSM2460360, GSM2754211, GSM2754213, GSM2754220, GSM2754224, GSM2754226, GSM2754237, GSM2754244, GSM2754246, GSM2754248 |
|||||||||||||||
| Cell/Tissue List |
HeLa, HepG2, HEK293T, A549, U2OS, MM6, Jurkat, HEK293A-TOA, MSC, TREX, iSLK, TIME |
|||||||||||||||
| Seq Type List | m6A-seq,MeRIP-seq | |||||||||||||||
| Transcript ID List | ENST00000356388.9,ENST00000440972.1 | |||||||||||||||
| Transcript Detail |
|
|||||||||||||||
| Conserved Sites | panTro5:m6A_site_41442 | |||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1