Details of RNA Modification Site of hg38
mod ID m6A_site_485087 mod Site chr2:97669750-97669751:+
mod Type m6A Sequence ATCTGAAGGGCCATCAGAAGACTGGCTTCTCCATGATGGTT
Motif Score 3.31938095238095
RNA Structure Motif ..((((((((....)).))))))........
 MFE -7.20
Support Dataset Num 2 Support sub-Dataset Num 2
Support Dataset List GSE90914, GSE93676
Support sub-Dataset List GSM2417479, GSM2460360
Cell/Tissue List HEK293A-TOA, TREX
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000609622.5,ENST00000631224.2,ENST00000605282.5,ENST00000601127.5,ENST00000604793.5,ENST00000603172.5,ENST00000428157.1,ENST00000608777.5,ENST00000599501.6,ENST00000609004.1,ENST00000450072.5,ENST00000627399.3,ENST00000609295.5,ENST00000609604.5,ENST00000451384.6,ENST00000605866.5,ENST00000605017.1,ENST00000604986.5,ENST00000615478.4,ENST00000609703.5
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000609622.5ENSG00000228486.10C2orf92processed_transcriptintron-2
ENST00000631224.2ENSG00000228486.10C2orf92processed_transcriptintron-1
ENST00000605282.5ENSG00000228486.10C2orf92processed_transcriptintron-2
ENST00000601127.5ENSG00000228486.10C2orf92processed_transcriptexon-1
ENST00000604793.5ENSG00000228486.10C2orf92processed_transcriptintron-2
ENST00000603172.5ENSG00000228486.10C2orf92processed_transcriptintron-2
ENST00000428157.1ENSG00000228486.10C2orf92retained_intronexon-1
ENST00000608777.5ENSG00000228486.10C2orf92processed_transcriptintron-1
ENST00000599501.6ENSG00000228486.10C2orf92protein_codingutr5-1
ENST00000609004.1ENSG00000228486.10C2orf92processed_transcriptexon-1
ENST00000450072.5ENSG00000228486.10C2orf92processed_transcriptintron-2
ENST00000627399.3ENSG00000228486.10C2orf92protein_codingutr5-1
ENST00000609295.5ENSG00000228486.10C2orf92processed_transcriptintron-1
ENST00000609604.5ENSG00000228486.10C2orf92processed_transcriptintron-2
ENST00000451384.6ENSG00000228486.10C2orf92processed_transcriptexon-1
ENST00000605866.5ENSG00000228486.10C2orf92processed_transcriptintron-3
ENST00000605017.1ENSG00000228486.10C2orf92processed_transcriptintron-1
ENST00000604986.5ENSG00000228486.10C2orf92processed_transcriptexon-2
ENST00000615478.4ENSG00000228486.10C2orf92retained_intronexon-1
ENST00000609703.5ENSG00000228486.10C2orf92processed_transcriptexon-2
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 28525753, 29109479

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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