Details of RNA Modification Site of hg38
mod ID m6A_site_485098 mod Site chr2:97702944-97702945:+
mod Type m6A Sequence TCCCATCCCAATTTGAATGGACCAAGAAAAACTGCTTTACC
Motif Score 3.62240476190476
RNA Structure Motif ..(((.......)))................
 MFE -1.20
Support Dataset Num 4 Support sub-Dataset Num 9
Support Dataset List
Support sub-Dataset List

GSM2739523, GSM2991403, GSM3582048, GSM3582049, GSM928399, GSM928401, GSM2417477, GSM2417478, GSM2417479
Cell/Tissue List HeLa, HEK293T, HEK293A-TOA
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000596740.5,ENST00000627399.3,ENST00000597654.5,ENST00000598737.5,ENST00000445382.6,ENST00000601509.5,ENST00000599435.5,ENST00000451384.6,ENST00000628093.1,ENST00000599501.6
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000596740.5ENSG00000228486.10C2orf92processed_transcriptexon-4
ENST00000627399.3ENSG00000228486.10C2orf92protein_codingutr3-8
ENST00000597654.5ENSG00000228486.10C2orf92protein_codingutr3-4
ENST00000598737.5ENSG00000228486.10C2orf92protein_codingutr3-4
ENST00000445382.6ENSG00000228486.10C2orf92retained_intronexon-5
ENST00000601509.5ENSG00000228486.10C2orf92nonsense_mediated_decayutr3-8
ENST00000599435.5ENSG00000228486.10C2orf92protein_codingutr3-6
ENST00000451384.6ENSG00000228486.10C2orf92processed_transcriptexon-10
ENST00000628093.1ENSG00000228486.10C2orf92processed_transcriptexon-3
ENST00000599501.6ENSG00000228486.10C2orf92protein_codingutr3-7
Conserved Sites panTro5:m6A_site_42120
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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