| mod ID | m6A_site_487996 | mod Site | chr2:108782766-108782767:+ | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
TTTCAAACATTGTTCCTCGGACTGCTGAGAACTTCAGAGCA |
||||||||
| Motif Score | 4.06504166666667 | ||||||||||
| RNA Structure Motif |
......((((.((((....)))))))).... |
MFE | -6.60 | ||||||||
| Support Dataset Num | 15 | Support sub-Dataset Num | 36 | ||||||||
| Support Dataset List | |||||||||||
| Support sub-Dataset List |
GSM2991416, GSM2884195, GSM2884197, GSM2884199, GSM2987449, GSM3396437, GSM3396438, GSM3582046, GSM3582047, GSM3582048, GSM3582049, GSM3582054, GSM928399, GSM928401, GSM1166139, GSM1166140, GSM1166141, GSM1339393, GSM1339395, GSM1339401, GSM1339405, GSM1339425, GSM1339427, GSM1339429, GSM1339439, GSM1723349, GSM1828596, GSM2010454, GSM2283212, GSM2283213, GSM2417477, GSM2417478, GSM2417479, GSM2460345, GSM2460347, GSM2602072 |
||||||||||
| Cell/Tissue List |
HeLa, CD34, HepG2, HEK293T, A549, U2OS, hNPCs, hESCs, fibroblasts, LCLs, MM6, Jurkat, HEK293A-TOA, iSLK, AML |
||||||||||
| Seq Type List | m6A-seq,MeRIP-seq,m6A-CLIP/IP,miCLIP | ||||||||||
| Transcript ID List | ENST00000283195.11 | ||||||||||
| Transcript Detail |
|
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| Conserved Sites | mm10:m6A_site_53192;rheMac8:m6A_site_16584 | ||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||
| snoRNA Guide Detail | na | ||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||
| Writer Catalysis Detail | na | ||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1