RMBase v3.0: Decipher the Landscape, Mechanism and Function of RNA Modifications by Integrating Multi-dimensional High-throughput Sequencing Data.

Details of RNA Modification Site of hg38

mod ID

m6A_site_488681

mod Site

chr2:111323540-111323541:-

mod Type

m6A

Sequence

CTTCCCACAAAGTTACTTGAACTGAGCTCTCCATAAGTACA

Motif Score

3.37338095238095

RNA Structure Motif

.....((((.....)))).............

MFE

-0.60

Support Dataset Num

Support sub-Dataset Num

Support Dataset List

GSE102493, GSE83438, GSE90914, GSE93676

Support sub-Dataset List

GSM2739534, GSM2203056, GSM2417477, GSM2460348

Cell/Tissue List

HeLa, Huh7, HEK293A-TOA, iSLK

Seq Type List

m6A-seq,MeRIP-seq

Transcript ID List

ENST00000609902.5,ENST00000622940.1,ENST00000439362.5,ENST00000431385.5,ENST00000645030.1,ENST00000444301.5,ENST00000645051.1,ENST00000451884.5,ENST00000443467.5,ENST00000609220.1,ENST00000642191.1,ENST00000432818.5,ENST00000643013.1

Transcript Detail

Transcript ID	Gene ID	Gene Name	Gene Type	Region
ENST00000609902.5	ENSG00000172965.15	MIR4435-2HG	lincRNA	intron-2
ENST00000622940.1	ENSG00000279191.1	AC068491.4	TEC	exon-1
ENST00000439362.5	ENSG00000172965.15	MIR4435-2HG	lincRNA	intron-3
ENST00000431385.5	ENSG00000172965.15	MIR4435-2HG	lincRNA	intron-2
ENST00000645030.1	ENSG00000172965.15	MIR4435-2HG	lincRNA	intron-3
ENST00000444301.5	ENSG00000172965.15	MIR4435-2HG	lincRNA	intron-3
ENST00000645051.1	ENSG00000172965.15	MIR4435-2HG	lincRNA	intron-3
ENST00000451884.5	ENSG00000172965.15	MIR4435-2HG	lincRNA	intron-2
ENST00000443467.5	ENSG00000172965.15	MIR4435-2HG	lincRNA	intron-3
ENST00000609220.1	ENSG00000172965.15	MIR4435-2HG	lincRNA	intron-1
ENST00000642191.1	ENSG00000172965.15	MIR4435-2HG	lincRNA	intron-3
ENST00000432818.5	ENSG00000172965.15	MIR4435-2HG	lincRNA	intron-3
ENST00000643013.1	ENSG00000172965.15	MIR4435-2HG	lincRNA	intron-3

Conserved Sites

snoRNA Num

snoRNA Guide Site

snoRNA Guide Detail

writer Num

Writer Name List

Writer Catalysis Detail

PubMed ID

29507755, 27773535, 28525753, 29109479

Discription & Help

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

♥ Click the "Show Detail" button to show detailed list and click again to hide it.