| mod ID | m6A_site_489485 | mod Site | chr2:112736738-112736739:- | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
ATTTGCCACAACATAGATGGACCTGGAGAACATTATGCTAA |
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| Motif Score | 3.62240476190476 | |||||||||||||||
| RNA Structure Motif |
((((......).)))................ |
MFE | -1.00 | |||||||||||||
| Support Dataset Num | 10 | Support sub-Dataset Num | 26 | |||||||||||||
| Support Dataset List | ||||||||||||||||
| Support sub-Dataset List |
GSM3396437, GSM3396438, GSM3582048, GSM3582049, GSM3582054, GSM3900734, GSM928399, GSM928401, GSM1135032, GSM1166139, GSM1339395, GSM1339407, GSM2203043, GSM2203044, GSM2203047, GSM2203052, GSM2203060, GSM2203063, GSM2203064, GSM2417477, GSM2417478, GSM2460347, GSM2460352, GSM2460354, GSM2460356, GSM2460358 |
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| Cell/Tissue List |
HEK293T, HeLa, A549, BGC823, U2OS, hESCs, fibroblasts, Huh7, HEK293A-TOA, iSLK, MSC, TIME |
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| Seq Type List | MeRIP-seq,m6A-seq | |||||||||||||||
| Transcript ID List | rmsk_642160,ENST00000302450.11 | |||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | panTro5:m6A_site_42517 | |||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1