| mod ID | m6A_site_489501 | mod Site | chr2:112737612-112737613:- | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
TAAACCTGTAATACCAGCAGACTTTCAATAAGAGACTCTTA |
||||||||
| Motif Score | 3.31938095238095 | ||||||||||
| RNA Structure Motif |
((((.......))))..((((.....)))). |
MFE | -2.60 | ||||||||
| Support Dataset Num | 10 | Support sub-Dataset Num | 31 | ||||||||
| Support Dataset List | |||||||||||
| Support sub-Dataset List |
GSM3396437, GSM3396438, GSM3582048, GSM3582049, GSM928399, GSM928401, GSM1166144, GSM1339393, GSM1339395, GSM1339405, GSM1339407, GSM1339439, GSM1594131, GSM1828596, GSM2203044, GSM2203047, GSM2203052, GSM2203060, GSM2203063, GSM2203064, GSM2417477, GSM2417478, GSM2417479, GSM2460347, GSM2460348, GSM2460352, GSM2460354, GSM2460356, GSM2460358, GSM2460360, GSM2460362 |
||||||||||
| Cell/Tissue List |
HEK293T, HeLa, U2OS, hNPCs, hESCs, fibroblasts, A549, GM12878, Huh7, HEK293A-TOA, iSLK, MSC, TIME, TREX |
||||||||||
| Seq Type List | MeRIP-seq,m6A-seq,m6A-CLIP/IP | ||||||||||
| Transcript ID List | ENST00000302450.11 | ||||||||||
| Transcript Detail |
|
||||||||||
| Conserved Sites | panTro5:m6A_site_42523 | ||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||
| snoRNA Guide Detail | na | ||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||
| Writer Catalysis Detail | na | ||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1