| mod ID | m6A_site_499681 | mod Site | chr2:172556143-172556144:+ | |||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
GCTGTGGCTTCTCTAGCGGGACTCGGCATGAGGCTGGCGCG |
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| Motif Score | 4.06504166666667 | |||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
((((((....((.(....).))..)))))). |
MFE | -8.90 | |||||||||||||||||||||||||||||||||
| Support Dataset Num | 3 | Support sub-Dataset Num | 8 | |||||||||||||||||||||||||||||||||
| Support Dataset List | GSE74016, GSE87516, GSE93676 | |||||||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM1908206, GSM2332986, GSM2332988, GSM2332989, GSM2332990, GSM2754214, GSM2754238, GSM2754240 |
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| Cell/Tissue List | MT4, HEK293T, iSLK | |||||||||||||||||||||||||||||||||||
| Seq Type List | MeRIP-seq,m6A-seq | |||||||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000410055.5,ENST00000436490.5,ENST00000392571.6,ENST00000431718.5,ENST00000443353.5,ENST00000282077.7 | |||||||||||||||||||||||||||||||||||
| Transcript Detail |
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| Conserved Sites | na | |||||||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||||||||||||
| writer Num | 1 | Writer Name List | RBM15 | |||||||||||||||||||||||||||||||||
| Writer Catalysis Detail |
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| PubMed ID | 27572442, 27773536, 29109479 |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
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School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1