Details of RNA Modification Site of hg38
mod ID m6A_site_506512 mod Site chr2:201221614-201221615:+
mod Type m6A Sequence TTCACTGACTTTCTTTTCGGACTCAGCCCACCTGCACCCAG
Motif Score 4.06504166666667
RNA Structure Motif (((...(((....))).)))((......)).
 MFE -0.40
Support Dataset Num 1 Support sub-Dataset Num 8
Support Dataset List GSE83438
Support sub-Dataset List

GSM2203044, GSM2203047, GSM2203055, GSM2203056, GSM2203059, GSM2203060, GSM2203063, GSM2203064
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000360132.7,ENST00000286186.10,rmsk_790741,ENST00000448480.1,ENST00000272879.9
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000360132.7ENSG00000003400.14CASP10protein_codingutr3-9
ENST00000286186.10ENSG00000003400.14CASP10protein_codingutr3-10
rmsk_790741rmsk_790741LTR7ERV1exon
ENST00000448480.1ENSG00000003400.14CASP10protein_codingintron-7
ENST00000272879.9ENSG00000003400.14CASP10protein_codingintron-9
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 27773535

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

♥ Click the "Show Detail" button to show detailed list and click again to hide it.

© 2023, Qu Lab. School of Life Science, Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1