| mod ID | m6A_site_507003 | mod Site | chr2:202265889-202265890:+ | |||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
CGCGTAGTCGGTGTTTTTGAACTGACTCTACAGCTTCTGGC |
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| Motif Score | 3.37338095238095 | |||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
(((((((........)))))))......... |
MFE | -8.00 | |||||||||||||||||||||||||||||||||
| Support Dataset Num | 3 | Support sub-Dataset Num | 7 | |||||||||||||||||||||||||||||||||
| Support Dataset List | GSE37002, GSE87190, GSE93676 | |||||||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM908331, GSM2324298, GSM2460352, GSM2460354, GSM2460358, GSM2754213, GSM2754214 |
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| Cell/Tissue List |
HepG2, peripheral-blood, MSC, TIME, iSLK |
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| Seq Type List | m6A-seq,MeRIP-seq | |||||||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000492740.5,ENST00000426814.5,ENST00000472050.5,ENST00000467734.5,ENST00000264279.10,ENST00000488403.5 | |||||||||||||||||||||||||||||||||||
| Transcript Detail |
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| Conserved Sites | na | |||||||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||||||||||||
| writer Num | 1 | Writer Name List | RBM15B | |||||||||||||||||||||||||||||||||
| Writer Catalysis Detail |
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| PubMed ID | 22575960, 29249359, 29109479 |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1