Details of RNA Modification Site of hg38
mod ID m6A_site_508876 mod Site chr2:209692960-209692961:+
mod Type m6A Sequence AACTCCAAAAGAACAAAAGGACTGGTTCATCGAAATGCCAA
Motif Score 4.06504166666667
RNA Structure Motif .....((((..........))))........
 MFE -1.90
Support Dataset Num 3 Support sub-Dataset Num 10
Support Dataset List GSE55572, GSE83438, GSE93676
Support sub-Dataset List

GSM1339393, GSM1339403, GSM2203060, GSM2460350, GSM2460356, GSM2460358, GSM2754214, GSM2754222, GSM2754224, GSM2754248
Cell/Tissue List

hNPCs, fibroblasts, Huh7, iSLK, TIME
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000361559.8,ENST00000471619.5,ENST00000447185.5,ENST00000461253.1,ENST00000360351.8,ENST00000392194.5,ENST00000445941.5,ENST00000482864.5,ENST00000452717.1,ENST00000199940.10
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000361559.8ENSG00000078018.19MAP2protein_codingintron-6
ENST00000471619.5ENSG00000078018.19MAP2processed_transcriptintron-3
ENST00000447185.5ENSG00000078018.19MAP2protein_codingcds-4
ENST00000461253.1ENSG00000078018.19MAP2processed_transcriptexon-2
ENST00000360351.8ENSG00000078018.19MAP2protein_codingcds-7
ENST00000392194.5ENSG00000078018.19MAP2protein_codingintron-5
ENST00000445941.5ENSG00000078018.19MAP2protein_codingcds-8
ENST00000482864.5ENSG00000078018.19MAP2processed_transcriptintron-3
ENST00000452717.1ENSG00000078018.19MAP2protein_codingintron-3
ENST00000199940.10ENSG00000078018.19MAP2protein_codingintron-7
Conserved Sites mm10:m6A_site_11959;rn6:m6A_site_104957
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 24981863, 27773535, 29109479

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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