Details of RNA Modification Site of hg38
mod ID m6A_site_511438 mod Site chr2:219076121-219076122:-
mod Type m6A Sequence GGTTCAGGTTTCTACCATGGACTTTAGGTATATAGGGCAAG
Motif Score 4.06504166666667
RNA Structure Motif .(((....)))....................
 MFE -2.30
Support Dataset Num 1 Support sub-Dataset Num 2
Support Dataset List GSE83438
Support sub-Dataset List GSM2203047, GSM2203051
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000356853.9,ENST00000418099.5,ENST00000318673.6,ENST00000498327.5,ENST00000409720.5
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000356853.9ENSG00000187736.12NHEJ1protein_codingutr3-8
ENST00000418099.5ENSG00000187736.12NHEJ1nonsense_mediated_decayutr3-9
ENST00000318673.6ENSG00000280537.2AC068946.1nonsense_mediated_decayutr3-17
ENST00000498327.5ENSG00000280537.2AC068946.1retained_intronexon-17
ENST00000409720.5ENSG00000187736.12NHEJ1protein_codingutr3-7
Conserved Sites mm10:m6A_site_14227
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 27773535

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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