| mod ID | m6A_site_519079 | mod Site | chr2:241671731-241671732:+ | |||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
GACGCAGTCCTGGGTGGGGGACTGGTTCACTTGGGCACCAC |
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| Motif Score | 4.06504166666667 | |||||||||||||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
...((((((((((.......)))))))))). |
MFE | -9.60 | |||||||||||||||||||||||||||||||||||||||||||
| Support Dataset Num | 10 | Support sub-Dataset Num | 32 | |||||||||||||||||||||||||||||||||||||||||||
| Support Dataset List | ||||||||||||||||||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739506, GSM2739507, GSM2739534, GSM2739535, GSM2991400, GSM2991403, GSM2987447, GSM2987449, GSM3083806, GSM3083809, GSM3083810, GSM2010456, GSM2283210, GSM2283211, GSM2283212, GSM2283215, GSM2324298, GSM2332987, GSM2332988, GSM2332990, GSM2417478, GSM2464901, GSM2464905, GSM2464909, GSM2464911, GSM2464913, GSM2464915, GSM2464921, GSM2464923, GSM2464927, GSM2464931, GSM2564019 |
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| Cell/Tissue List |
HeLa, HepG2, MM6, Jurkat, CD4T, peripheral-blood, HEK293T, HEK293A-TOA, endometrial, HEC-1-A, NB4 |
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| Seq Type List | m6A-seq | |||||||||||||||||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000404914.8,ENST00000475693.1,ENST00000405546.7,ENST00000494132.1,ENST00000402096.5,ENST00000494465.5,ENST00000344376.9,ENST00000482507.5 | |||||||||||||||||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | na | |||||||||||||||||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||||||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||||||||||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1