Details of RNA Modification Site of hg38
mod ID m6A_site_519518 mod Site chr20:391412-391413:+
mod Type m6A Sequence TCTACGCCTTTTTCACTCGGACCCATGGGGACATGCACAGC
Motif Score 3.62240476190476
RNA Structure Motif ..................((((....)))).
 MFE -2.90
Support Dataset Num 3 Support sub-Dataset Num 4
Support Dataset List GSE102493, GSE110320, GSE93911
Support sub-Dataset List

GSM2991399, GSM2987447, GSM2987448, GSM2464931
Cell/Tissue List HeLa, HepG2, HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000422053.3,ENST00000217233.8,ENST00000449710.5
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000422053.3ENSG00000101255.11TRIB3protein_codingcds-4
ENST00000217233.8ENSG00000101255.11TRIB3protein_codingcds-3
ENST00000449710.5ENSG00000101255.11TRIB3protein_codingcds-3
Conserved Sites mm10:m6A_site_361992
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 1 Writer Name List RBM15
Writer Catalysis Detail

Writer Name Writer ID Writer Binding Site Source
RBM15RBM15:CH49967chr20:391402-391466SBDH828-13482
PubMed ID 29507755, 3086759, 30154548

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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