| mod ID | m6A_site_523853 | mod Site | chr20:17614823-17614824:- | |||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
CTGGGGCGCGCCGCCACGAGACTGCAGGAGCTTCTGAAGAC |
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| Motif Score | 3.31938095238095 | |||||||||||||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
..((.((((.........)).)).))..... |
MFE | -4.60 | |||||||||||||||||||||||||||||||||||||||||||
| Support Dataset Num | 17 | Support sub-Dataset Num | 55 | |||||||||||||||||||||||||||||||||||||||||||
| Support Dataset List | ||||||||||||||||||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739502, GSM2739503, GSM2739522, GSM2739523, GSM2739534, GSM2884195, GSM2884197, GSM2884199, GSM2987447, GSM908331, GSM1135020, GSM1135021, GSM1166139, GSM1166140, GSM1166141, GSM1166142, GSM1166143, GSM1339393, GSM1339401, GSM1339427, GSM1723347, GSM1723351, GSM1982257, GSM2010454, GSM2010456, GSM2203043, GSM2203044, GSM2203047, GSM2203051, GSM2203052, GSM2203055, GSM2203056, GSM2203059, GSM2203060, GSM2203064, GSM2283210, GSM2283211, GSM2283212, GSM2283214, GSM2324298, GSM2324310, GSM2332988, GSM2332990, GSM2460362, GSM2464905, GSM2464909, GSM2464911, GSM2464913, GSM2464917, GSM2464919, GSM2464921, GSM2464923, GSM2464931, GSM2564019, GSM2564022 |
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| Cell/Tissue List |
HeLa, CD34, HepG2, U2OS, hNPCs, HEK293T, A549, LCLs, MM6, Huh7, Jurkat, CD4T, peripheral-blood, TREX, endometrial, HEC-1-A, NB4 |
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| Seq Type List | m6A-seq,MeRIP-seq | |||||||||||||||||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000468428.1,ENST00000470422.5,ENST00000610403.4,ENST00000455029.3,ENST00000377807.6,ENST00000246043.8,ENST00000377813.5,ENST00000360807.8 | |||||||||||||||||||||||||||||||||||||||||||||
| Transcript Detail |
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| Conserved Sites | mm10:m6A_site_359636;panTro5:m6A_site_36442;rheMac8:m6A_site_8260;susScr11:m6A_site_54866 | |||||||||||||||||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||||||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||||||||||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1