Details of RNA Modification Site of hg38
mod ID m6A_site_532876 mod Site chr20:44431739-44431740:+
mod Type m6A Sequence GGTAGGAGGGAAACTGTTGGACCGACTCCTGCCCCCTGCTC
Motif Score 3.62240476190476
RNA Structure Motif ..(((.....((((...)))).....)))..
 MFE -6.00
Support Dataset Num 5 Support sub-Dataset Num 14
Support Dataset List
Support sub-Dataset List

GSM2987449, GSM3582052, GSM3582053, GSM3582054, GSM1339425, GSM1339429, GSM1339439, GSM2203047, GSM2203052, GSM2203056, GSM2203060, GSM2203063, GSM2203064, GSM2464931
Cell/Tissue List HepG2, A549, Huh7, HEC-1-A
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000316099.8,ENST00000619550.4
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000316099.8ENSG00000101076.16HNF4Aprotein_codingutr3-10
ENST00000619550.4ENSG00000101076.16HNF4Aprotein_codingutr3-11
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

♥ Click the "Show Detail" button to show detailed list and click again to hide it.

© 2023, Qu Lab. School of Life Science, Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1