| mod ID | m6A_site_533115 | mod Site | chr20:44695305-44695306:- | |||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
AGGGTAAAGCCATCACCAGGACAACCTTGGTGACAGGCTGG |
|||||||||||||||||||||||
| Motif Score | 3.64304761904762 | |||||||||||||||||||||||||
| RNA Structure Motif |
.......((((((((.....))))))))... |
MFE | -10.70 | |||||||||||||||||||||||
| Support Dataset Num | 4 | Support sub-Dataset Num | 8 | |||||||||||||||||||||||
| Support Dataset List | ||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739522, GSM2739523, GSM2739534, GSM2739535, GSM2991403, GSM1135032, GSM1272366, GSM2417479 |
|||||||||||||||||||||||||
| Cell/Tissue List | HeLa, H1A, HEK293A-TOA | |||||||||||||||||||||||||
| Seq Type List | m6A-seq | |||||||||||||||||||||||||
| Transcript ID List | ENST00000419931.1,ENST00000427598.5,ENST00000415889.2,ENST00000445420.5 | |||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | na | |||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
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School of Life Science,
Sun Yat-sen University, China.
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