Details of RNA Modification Site of hg38
mod ID m6A_site_533464 mod Site chr20:45076003-45076004:+
mod Type m6A Sequence AGACATGATCTCTACCAGGGACTCTCAGCAAACACGGGACT
Motif Score 4.06504166666667
RNA Structure Motif .(((((((...))))).))............
 MFE -3.10
Support Dataset Num 6 Support sub-Dataset Num 11
Support Dataset List
Support sub-Dataset List

GSM2884199, GSM3396437, GSM3396438, GSM928399, GSM1135032, GSM1135033, GSM1339401, GSM1339425, GSM1339427, GSM1339439, GSM2602070
Cell/Tissue List CD34, HEK293T, HeLa, A549, AML
Seq Type List m6A-seq,MeRIP-seq,miCLIP
Transcript ID List ENST00000372806.8,ENST00000499879.6
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000372806.8ENSG00000101109.12STK4protein_codingutr3-11
ENST00000499879.6ENSG00000101109.12STK4protein_codingutr3-10
Conserved Sites mm10:m6A_site_367765;rn6:m6A_site_69463;susScr11:m6A_site_57010
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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