Details of RNA Modification Site of hg38
mod ID m6A_site_536122 mod Site chr20:49988198-49988199:+
mod Type m6A Sequence GGCCACATCAGCCCCACAGGACTTTGATGAAGACCATTTTC
Motif Score 4.06504166666667
RNA Structure Motif ((((((.((....))...)))))).......
 MFE -5.10
Support Dataset Num 6 Support sub-Dataset Num 17
Support Dataset List
Support sub-Dataset List

GSM2739506, GSM2739507, GSM2739522, GSM2739523, GSM2739534, GSM2739535, GSM2991403, GSM1135032, GSM1135033, GSM1272362, GSM2417477, GSM2417478, GSM2417479, GSM2460354, GSM2460356, GSM2754246, GSM2464911
Cell/Tissue List

HeLa, H1A, HEK293A-TOA, MSC, TIME, endometrial
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000244050.3
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000244050.3ENSG00000124216.4SNAI1protein_codingutr3-3
Conserved Sites mm10:m6A_site_370067;susScr11:m6A_site_57471
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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