| mod ID | m6A_site_538204 | mod Site | chr20:58309815-58309816:+ | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
CCCCACGCGGCTGGCAGCGGACAGGCCGGACCTACGGCCGG |
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| Motif Score | 3.64304761904762 | |||||||||||||||
| RNA Structure Motif |
...(((((((.........))))).)).... |
MFE | -9.50 | |||||||||||||
| Support Dataset Num | 8 | Support sub-Dataset Num | 24 | |||||||||||||
| Support Dataset List | ||||||||||||||||
| Support sub-Dataset List |
GSM1166139, GSM1166141, GSM1166143, GSM1166144, GSM1339429, GSM2283211, GSM2332977, GSM2332978, GSM2332985, GSM2332986, GSM2332987, GSM2332988, GSM2332989, GSM2332990, GSM2417479, GSM2460352, GSM2754213, GSM2754214, GSM2754216, GSM2754224, GSM2754237, GSM2754240, GSM2754244, GSM2483505 |
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| Cell/Tissue List |
U2OS, A549, Jurkat, GSC-11, HEK293T, HEK293A-TOA, MSC, iSLK, TIME, GSCs |
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| Seq Type List | MeRIP-seq,m6A-seq | |||||||||||||||
| Transcript ID List | ENST00000488949.1,ENST00000244040.4 | |||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | na | |||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1