Details of RNA Modification Site of hg38
mod ID m6A_site_539970 mod Site chr20:62351238-62351239:-
mod Type m6A Sequence AGCTCCCCCAACCTTTCAGGACACAACAGACAACTTCCCTG
Motif Score 3.64304761904762
RNA Structure Motif ......(((...)))................
 MFE -0.60
Support Dataset Num 1 Support sub-Dataset Num 2
Support Dataset List GSE102493
Support sub-Dataset List GSM2739502, GSM2739503
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000370677.4,ENST00000252999.7,ENST00000497053.2
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000370677.4ENSG00000130702.15LAMA5processed_transcriptintron-6
ENST00000252999.7ENSG00000130702.15LAMA5protein_codingintron-6
ENST00000497053.2ENSG00000130702.15LAMA5protein_codingcds-3
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 29507755

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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