Details of RNA Modification Site of hg38
mod ID m6A_site_54434 mod Site chr1:153360692-153360693:+
mod Type m6A Sequence ACACATCATGGAGGACCTGGACACAAATGCAGACAAGCAGC
Motif Score 3.64304761904762
RNA Structure Motif ...........(((.(......).)))....
 MFE -1.80
Support Dataset Num 7 Support sub-Dataset Num 16
Support Dataset List
Support sub-Dataset List

GSM3900734, GSM2010454, GSM2010456, GSM2203052, GSM2283214, GSM2283215, GSM2324298, GSM2324308, GSM2324310, GSM2464905, GSM2464907, GSM2464909, GSM2464913, GSM2464915, GSM2464919, GSM2564022
Cell/Tissue List

BGC823, MM6, Huh7, CD4T, peripheral-blood, endometrial
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000368738.4
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000368738.4ENSG00000163220.11S100A9protein_codingcds-3
Conserved Sites mm10:m6A_site_391957;susScr11:m6A_site_92536
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

♥ Click the "Show Detail" button to show detailed list and click again to hide it.

© 2023, Qu Lab. School of Life Science, Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1