| mod ID | m6A_site_546634 | mod Site | chr21:34887638-34887639:- | |||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
CTCAGCTCTTGCTTTTCGGGACTGAAGCCAGTTTTGCATGA |
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| Motif Score | 4.06504166666667 | |||||||||||||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
...........((((((((....)))))))) |
MFE | -6.10 | |||||||||||||||||||||||||||||||||||||||||||
| Support Dataset Num | 21 | Support sub-Dataset Num | 54 | |||||||||||||||||||||||||||||||||||||||||||
| Support Dataset List | ||||||||||||||||||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739506, GSM2739507, GSM2739522, GSM2739523, GSM2991403, GSM2884195, GSM2884197, GSM2884199, GSM2987449, GSM3396437, GSM3396438, GSM3582047, GSM928399, GSM908329, GSM908333, GSM908335, GSM908337, GSM1135032, GSM1135033, GSM1166139, GSM1166142, GSM1166143, GSM1166144, GSM1339401, GSM1339403, GSM1339405, GSM1339425, GSM1339427, GSM1339429, GSM1339439, GSM1594131, GSM1828594, GSM2010454, GSM2010456, GSM2203060, GSM2203063, GSM2203064, GSM2283211, GSM2324308, GSM2417477, GSM2417478, GSM2417479, GSM2460345, GSM2460347, GSM2460348, GSM2460352, GSM2460354, GSM2460356, GSM2460358, GSM2460360, GSM2754224, GSM2564019, GSM2564022, GSM2602070 |
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| Cell/Tissue List |
HeLa, CD34, HepG2, HEK293T, U2OS, fibroblasts, A549, GM12878, CD8T, MM6, Huh7, Jurkat, peripheral-blood, HEK293A-TOA, iSLK, MSC, TIME, TREX, NB4, AML |
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| Seq Type List | m6A-seq,MeRIP-seq,m6A-CLIP/IP,miCLIP | |||||||||||||||||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000475045.6,ENST00000437180.5,ENST00000300305.7,ENST00000358356.9,ENST00000344691.8,ENST00000455571.5,ENST00000482318.5,ENST00000399237.6 | |||||||||||||||||||||||||||||||||||||||||||||
| Transcript Detail |
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| Conserved Sites | panTro5:m6A_site_38393 | |||||||||||||||||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||||||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||||||||||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1