Details of RNA Modification Site of hg38
mod ID m6A_site_548572 mod Site chr21:41168406-41168407:+
mod Type m6A Sequence GTAGTTGCGCCCACCCCGGGACCCGGGACCCCTGCCGAGCG
Motif Score 3.62240476190476
RNA Structure Motif .(((.....(((((...))))).....))).
 MFE -9.30
Support Dataset Num 4 Support sub-Dataset Num 6
Support Dataset List
Support sub-Dataset List

GSM2739502, GSM3083805, GSM908331, GSM2332986, GSM2332988, GSM2332989
Cell/Tissue List HeLa, HepG2, HEK293T
Seq Type List m6A-seq
Transcript ID List ENST00000330333.11,ENST00000328735.10,ENST00000347667.5
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000330333.11ENSG00000182240.16BACE2protein_codingcds-1
ENST00000328735.10ENSG00000182240.16BACE2protein_codingcds-1
ENST00000347667.5ENSG00000182240.16BACE2protein_codingcds-1
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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