Details of RNA Modification Site of hg38
mod ID m6A_site_548687 mod Site chr21:41279764-41279765:+
mod Type m6A Sequence GACAGCTTTGACAAAGAGAGACTGTGGCTGGGTGGCCCGGG
Motif Score 3.31938095238095
RNA Structure Motif ((((.....)))).....((.((...)).))
 MFE -1.20
Support Dataset Num 8 Support sub-Dataset Num 20
Support Dataset List
Support sub-Dataset List

GSM2739502, GSM2739503, GSM2739507, GSM2739522, GSM2739523, GSM2739534, GSM2739535, GSM3396437, GSM3582048, GSM3582049, GSM908329, GSM908331, GSM908337, GSM1135020, GSM1135021, GSM1135032, GSM1135033, GSM2417477, GSM2460358, GSM2754224
Cell/Tissue List

HeLa, HEK293T, HepG2, HEK293A-TOA, TIME
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000347667.5,ENST00000330333.11
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000347667.5ENSG00000182240.16BACE2protein_codingutr3-8
ENST00000330333.11ENSG00000182240.16BACE2protein_codingutr3-9
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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