Details of RNA Modification Site of hg38
mod ID m6A_site_552156 mod Site chr21:46098168-46098169:+
mod Type m6A Sequence GGGAGCGGAGCCTCCTCGGGACCAGGTGAGCGCCTCCCGGA
Motif Score 3.62240476190476
RNA Structure Motif .((.(((.(((.(....)))).).)).))..
 MFE -7.40
Support Dataset Num 3 Support sub-Dataset Num 11
Support Dataset List GSE52600, GSE93676, GSE93911
Support sub-Dataset List

GSM1272362, GSM1272364, GSM2460352, GSM2754220, GSM2754238, GSM2754240, GSM2754244, GSM2464907, GSM2464911, GSM2464913, GSM2464923
Cell/Tissue List H1A, H1B, MSC, iSLK, endometrial
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000300527.8,ENST00000310645.9
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000300527.8ENSG00000142173.15COL6A2protein_codingutr5-1
ENST00000310645.9ENSG00000142173.15COL6A2protein_codingutr5-1
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 25456834, 29109479, 30154548

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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