| mod ID | m6A_site_554206 | mod Site | chr22:19037763-19037764:- | |||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
GGCACCCTTTTGCCTGACGGACCCTGTTGCCTGCTCCTGGG |
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| Motif Score | 3.62240476190476 | |||||||||||||||||||||||||
| RNA Structure Motif |
......((.((((((...))))))...)).. |
MFE | -2.90 | |||||||||||||||||||||||
| Support Dataset Num | 4 | Support sub-Dataset Num | 15 | |||||||||||||||||||||||
| Support Dataset List | ||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739506, GSM2991403, GSM1135020, GSM1135021, GSM1135032, GSM1135033, GSM2417478, GSM2460345, GSM2460348, GSM2460354, GSM2460358, GSM2460360, GSM2754226, GSM2754235, GSM2754238 |
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| Cell/Tissue List |
HeLa, HEK293A-TOA, iSLK, MSC, TIME, TREX |
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| Seq Type List | m6A-seq,MeRIP-seq | |||||||||||||||||||||||||
| Transcript ID List | ENST00000263196.12,ENST00000545799.5,ENST00000389262.8,ENST00000537045.5 | |||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | mm10:m6A_site_232747 | |||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1