Details of RNA Modification Site of hg38
mod ID m6A_site_55820 mod Site chr1:154601348-154601349:-
mod Type m6A Sequence GCCAGACCAGAACCAGCAAGACTGAAACCACCTGTTCATTA
Motif Score 3.31938095238095
RNA Structure Motif ........(((.....)))............
 MFE -1.10
Support Dataset Num 26 Support sub-Dataset Num 120
Support Dataset List
Support sub-Dataset List

GSM2739502, GSM2739503, GSM2739506, GSM2739507, GSM2739522, GSM2739523, GSM2739534, GSM2739535, GSM2991403, GSM2884195, GSM2884197, GSM2884199, GSM2987449, GSM3396437, GSM3396438, GSM3582046, GSM3582047, GSM3582048, GSM3582049, GSM3582052, GSM3582053, GSM3582054, GSM928399, GSM928401, GSM928403, GSM908329, GSM908331, GSM908333, GSM908335, GSM908337, GSM1135020, GSM1135021, GSM1135032, GSM1135033, GSM1166139, GSM1166140, GSM1166141, GSM1166142, GSM1166143, GSM1166144, GSM1272358, GSM1272360, GSM1272362, GSM1272366, GSM1272368, GSM1339393, GSM1339395, GSM1339401, GSM1339403, GSM1339405, GSM1339407, GSM1339425, GSM1339427, GSM1339429, GSM1339439, GSM1594131, GSM1723347, GSM1723349, GSM1723351, GSM1828594, GSM1828596, GSM1982257, GSM1982263, GSM2010454, GSM2010456, GSM2203043, GSM2203044, GSM2203047, GSM2203051, GSM2203052, GSM2203055, GSM2203056, GSM2203059, GSM2203060, GSM2203063, GSM2203064, GSM2283210, GSM2283211, GSM2283212, GSM2283213, GSM2283214, GSM2283215, GSM2324298, GSM2324308, GSM2324310, GSM2332975, GSM2417477, GSM2417478, GSM2417479, GSM2460345, GSM2460347, GSM2460348, GSM2460350, GSM2460352, GSM2460354, GSM2460356, GSM2460358, GSM2460360, GSM2460362, GSM2754211, GSM2754213, GSM2754214, GSM2754216, GSM2754220, GSM2754222, GSM2754224, GSM2754226, GSM2754235, GSM2754237, GSM2754238, GSM2754240, GSM2754244, GSM2754246, GSM2754248, GSM2464917, GSM2464919, GSM2464931, GSM2483505, GSM2564019, GSM2564022
Cell/Tissue List

HeLa, CD34, HepG2, HEK293T, A549, U2OS, H1A, H1B, hNPCs, hESCs, fibroblasts, GM12878, LCLs, CD8T, H1299, MM6, Huh7, Jurkat, CD4T, peripheral-blood, GSC-11, HEK293A-TOA, iSLK, MSC, TIME, TREX, endometrial, HEC-1-A, GSCs, NB4
Seq Type List m6A-seq,MeRIP-seq,m6A-CLIP/IP
Transcript ID List ENST00000649042.1,ENST00000529168.2,ENST00000647682.1,ENST00000649022.1,ENST00000649724.1,ENST00000368471.8,ENST00000648714.1,ENST00000648311.1,ENST00000649593.1,ENST00000463920.5,ENST00000647597.1,ENST00000649749.1,ENST00000648231.1,ENST00000648871.1,ENST00000368474.9,ENST00000649021.1
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000649042.1ENSG00000160710.16ADARprotein_codingcds-3
ENST00000529168.2ENSG00000160710.16ADARprotein_codingcds-2
ENST00000647682.1ENSG00000160710.16ADARretained_intronexon-2
ENST00000649022.1ENSG00000160710.16ADARprotein_codingcds-1
ENST00000649724.1ENSG00000160710.16ADARprotein_codingcds-2
ENST00000368471.8ENSG00000160710.16ADARprotein_codingcds-2
ENST00000648714.1ENSG00000160710.16ADARnonsense_mediated_decaycds-1
ENST00000648311.1ENSG00000160710.16ADARprotein_codingcds-2
ENST00000649593.1ENSG00000160710.16ADARprotein_codingcds-2
ENST00000463920.5ENSG00000160710.16ADARretained_intronexon-3
ENST00000647597.1ENSG00000160710.16ADARprotein_codingcds-2
ENST00000649749.1ENSG00000160710.16ADARprotein_codingcds-2
ENST00000648231.1ENSG00000160710.16ADARprotein_codingcds-2
ENST00000648871.1ENSG00000160710.16ADARprotein_codingcds-2
ENST00000368474.9ENSG00000160710.16ADARprotein_codingcds-2
ENST00000649021.1ENSG00000160710.16ADARretained_intronexon-2
Conserved Sites mm10:m6A_site_390839;panTro5:m6A_site_4431;rheMac8:m6A_site_3904
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

♥ Click the "Show Detail" button to show detailed list and click again to hide it.

© 2023, Qu Lab. School of Life Science, Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1