Details of RNA Modification Site of hg38
mod ID m6A_site_561981 mod Site chr22:30972054-30972055:+
mod Type m6A Sequence ACTGTCTTTGCAGATAGCAGACTCCTTGAAAGCAGGGTCCT
Motif Score 3.31938095238095
RNA Structure Motif .(((((.....)))))...((((....))))
 MFE -4.20
Support Dataset Num 2 Support sub-Dataset Num 2
Support Dataset List GSE102493, GSE83438
Support sub-Dataset List GSM2991416, GSM2203051
Cell/Tissue List HeLa, Huh7
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000643877.1,ENST00000519077.4,ENST00000569384.2,ENST00000566220.2,ENST00000602971.2,ENST00000643071.1,ENST00000540687.6,rmsk_5272716,ENST00000646496.1,ENST00000643077.1,ENST00000643280.1,ENST00000644027.1,ENST00000569149.2,ENST00000643920.1,ENST00000644773.1,ENST00000647354.1,ENST00000643553.1,ENST00000563812.2,ENST00000521091.6
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000643877.1ENSG00000253352.9TUG1bidirectional_promoter_lncRNAintron-1
ENST00000519077.4ENSG00000253352.9TUG1bidirectional_promoter_lncRNAintron-2
ENST00000569384.2ENSG00000253352.9TUG1bidirectional_promoter_lncRNAintron-1
ENST00000566220.2ENSG00000253352.9TUG1bidirectional_promoter_lncRNAintron-1
ENST00000602971.2ENSG00000253352.9TUG1bidirectional_promoter_lncRNAexon-2
ENST00000643071.1ENSG00000253352.9TUG1bidirectional_promoter_lncRNAintron-1
ENST00000540687.6ENSG00000253352.9TUG1bidirectional_promoter_lncRNAintron-1
rmsk_5272716rmsk_5272716L2cL2exon
ENST00000646496.1ENSG00000253352.9TUG1bidirectional_promoter_lncRNAexon-2
ENST00000643077.1ENSG00000253352.9TUG1bidirectional_promoter_lncRNAexon-2
ENST00000643280.1ENSG00000253352.9TUG1bidirectional_promoter_lncRNAintron-1
ENST00000644027.1ENSG00000253352.9TUG1bidirectional_promoter_lncRNAexon-1
ENST00000569149.2ENSG00000253352.9TUG1bidirectional_promoter_lncRNAintron-1
ENST00000643920.1ENSG00000253352.9TUG1bidirectional_promoter_lncRNAintron-1
ENST00000644773.1ENSG00000253352.9TUG1bidirectional_promoter_lncRNAintron-1
ENST00000647354.1ENSG00000253352.9TUG1bidirectional_promoter_lncRNAintron-1
ENST00000643553.1ENSG00000253352.9TUG1bidirectional_promoter_lncRNAintron-1
ENST00000563812.2ENSG00000253352.9TUG1bidirectional_promoter_lncRNAexon-1
ENST00000521091.6ENSG00000253352.9TUG1bidirectional_promoter_lncRNAexon-2
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 29507755, 27773535

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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