| mod ID | m6A_site_568088 | mod Site | chr22:41117787-41117788:+ | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
GGCTCTCCCCAGATGGGAGGACAAACAGGATTGAGAGGCCC |
|||||||||||||
| Motif Score | 3.64304761904762 | |||||||||||||||
| RNA Structure Motif |
((((.....)))).................. |
MFE | -4.40 | |||||||||||||
| Support Dataset Num | 23 | Support sub-Dataset Num | 76 | |||||||||||||
| Support Dataset List | ||||||||||||||||
| Support sub-Dataset List |
GSM2739502, GSM2739503, GSM2884195, GSM2884197, GSM2987449, GSM3396437, GSM3396438, GSM3582046, GSM3582047, GSM3582048, GSM3582049, GSM3582052, GSM3582053, GSM3582054, GSE129842, GSM928399, GSM928401, GSM928403, GSM908333, GSM908337, GSM1135020, GSM1135021, GSM1166139, GSM1166140, GSM1166141, GSM1166143, GSM1272358, GSM1272360, GSM1272366, GSM1272368, GSM1339425, GSM1594131, GSM2010454, GSM2203060, GSM2203064, GSM2283210, GSM2283211, GSM2283212, GSM2283214, GSM2324292, GSM2324298, GSM2324308, GSM2324310, GSM2332975, GSM2417477, GSM2417478, GSM2417479, GSM2460345, GSM2460347, GSM2460348, GSM2460350, GSM2460352, GSM2460354, GSM2460356, GSM2460358, GSM2460360, GSM2460362, GSM2754211, GSM2754213, GSM2754214, GSM2754216, GSM2754220, GSM2754222, GSM2754224, GSM2754226, GSM2754235, GSM2754237, GSM2754238, GSM2754240, GSM2754244, GSM2754246, GSM2754248, GSM2464917, GSM2464919, GSM2464931, GSM2564019 |
|||||||||||||||
| Cell/Tissue List |
HeLa, CD34, HepG2, HEK293T, A549, hESC-HEK293T, U2OS, H1A, H1B, GM12878, MM6, Huh7, Jurkat, CD4T, peripheral-blood, GSC-11, HEK293A-TOA, iSLK, MSC, TIME, TREX, endometrial, HEC-1-A, NB4 |
|||||||||||||||
| Seq Type List | m6A-seq,MeRIP-seq,MAZTER-seq | |||||||||||||||
| Transcript ID List | ENST00000634787.1,ENST00000263253.9 | |||||||||||||||
| Transcript Detail |
|
|||||||||||||||
| Conserved Sites | mm10:m6A_site_215712;rheMac8:m6A_site_9384 | |||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1