Details of RNA Modification Site of hg38
mod ID m6A_site_571628 mod Site chr22:46220165-46220166:+
mod Type m6A Sequence TGGAAACAGTTCATTCTGAGACTCTGAGCTGTAGCTTAACA
Motif Score 3.31938095238095
RNA Structure Motif ((((((((...........))))))))....
 MFE -7.90
Support Dataset Num 5 Support sub-Dataset Num 8
Support Dataset List
Support sub-Dataset List

GSM2991403, GSM3396437, GSM3396438, GSM928401, GSM1339395, GSM2460348, GSM2460358, GSM2754248
Cell/Tissue List HeLa, HEK293T, hESCs, iSLK, TIME
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000262735.9,ENST00000407236.5,ENST00000493286.1,ENST00000402126.1
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000262735.9ENSG00000186951.16PPARAprotein_codingintron-6
ENST00000407236.5ENSG00000186951.16PPARAprotein_codingintron-6
ENST00000493286.1ENSG00000186951.16PPARAretained_intronexon-6
ENST00000402126.1ENSG00000186951.16PPARAprotein_codingintron-5
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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