| mod ID | m6A_site_577136 | mod Site | chr3:11556248-11556249:+ | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
GCAGCGCGGCTCTGGGAAGAACTTCACGGAGCCCCTTCTTA |
||||||||
| Motif Score | 3.37338095238095 | ||||||||||
| RNA Structure Motif |
..(((((((.(((....))).)))))))... |
MFE | -13.50 | ||||||||
| Support Dataset Num | 11 | Support sub-Dataset Num | 36 | ||||||||
| Support Dataset List | |||||||||||
| Support sub-Dataset List |
GSM2739506, GSM2739507, GSM2739534, GSM2739535, GSM2991403, GSM2987447, GSM3083805, GSM3083806, GSM3083809, GSM3083810, GSM1272358, GSM1272362, GSM1272364, GSM1272366, GSM2010456, GSM2283210, GSM2283211, GSM2283212, GSM2324292, GSM2324310, GSM2332977, GSM2332978, GSM2332988, GSM2464905, GSM2464907, GSM2464909, GSM2464911, GSM2464913, GSM2464915, GSM2464917, GSM2464919, GSM2464921, GSM2464923, GSM2464927, GSM2464931, GSM2564019 |
||||||||||
| Cell/Tissue List |
HeLa, HepG2, H1A, H1B, MM6, Jurkat, peripheral-blood, GSC-11, HEK293T, endometrial, HEC-1-A, NB4 |
||||||||||
| Seq Type List | m6A-seq | ||||||||||
| Transcript ID List | ENST00000354449.7 | ||||||||||
| Transcript Detail |
|
||||||||||
| Conserved Sites | na | ||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||
| snoRNA Guide Detail | na | ||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||
| Writer Catalysis Detail | na | ||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1