Details of RNA Modification Site of hg38
mod ID m6A_site_577303 mod Site chr3:12434134-12434135:+
mod Type m6A Sequence CCTGCAGGAGATCTACAAGGACTTGTACTAGCAGAGAGTCC
Motif Score 4.06504166666667
RNA Structure Motif (.(((.(((....)))))).)..........
 MFE -2.10
Support Dataset Num 16 Support sub-Dataset Num 36
Support Dataset List
Support sub-Dataset List

GSM2739506, GSM2739507, GSM2739522, GSM2739535, GSM2991403, GSM2987449, GSM3396437, GSM3396438, GSM3582052, GSM3582054, GSM928399, GSM908337, GSM1135032, GSM1135033, GSM1166139, GSM1339425, GSM1339427, GSM1339429, GSM1339439, GSM1828596, GSM2010454, GSM2010456, GSM2203047, GSM2203060, GSM2203064, GSM2417477, GSM2460345, GSM2460347, GSM2460350, GSM2460352, GSM2460354, GSM2460358, GSM2754237, GSM2464909, GSM2564019, GSM2564022
Cell/Tissue List

HeLa, HepG2, HEK293T, A549, U2OS, MM6, Huh7, HEK293A-TOA, iSLK, MSC, TIME, endometrial, NB4
Seq Type List m6A-seq,MeRIP-seq,m6A-CLIP/IP
Transcript ID List ENST00000397000.6,ENST00000652431.1,ENST00000397012.7,ENST00000643888.2,ENST00000651826.1,ENST00000397010.7,ENST00000650761.1,ENST00000644622.2,ENST00000652098.1,ENST00000651735.1,ENST00000397026.7,ENST00000397015.7,ENST00000397023.5,ENST00000287820.10,ENST00000309576.11,ENST00000643197.2
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000397000.6ENSG00000132170.21PPARGprotein_codingutr3-6
ENST00000652431.1ENSG00000132170.21PPARGprotein_codingcds-7
ENST00000397012.7ENSG00000132170.21PPARGprotein_codingcds-8
ENST00000643888.2ENSG00000132170.21PPARGprotein_codingcds-9
ENST00000651826.1ENSG00000132170.21PPARGprotein_codingcds-7
ENST00000397010.7ENSG00000132170.21PPARGprotein_codingcds-8
ENST00000650761.1ENSG00000132170.21PPARGprotein_codingcds-8
ENST00000644622.2ENSG00000132170.21PPARGprotein_codingcds-10
ENST00000652098.1ENSG00000132170.21PPARGprotein_codingcds-5
ENST00000651735.1ENSG00000132170.21PPARGprotein_codingcds-8
ENST00000397026.7ENSG00000132170.21PPARGprotein_codingcds-9
ENST00000397015.7ENSG00000132170.21PPARGprotein_codingcds-7
ENST00000397023.5ENSG00000132170.21PPARGnonsense_mediated_decayutr3-8
ENST00000287820.10ENSG00000132170.21PPARGprotein_codingcds-7
ENST00000309576.11ENSG00000132170.21PPARGprotein_codingcds-8
ENST00000643197.2ENSG00000132170.21PPARGprotein_codingcds-9
Conserved Sites mm10:m6A_site_517321;rn6:m6A_site_74605
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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