| mod ID | m6A_site_580100 | mod Site | chr3:19947653-19947654:+ | |||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
CACGCGCAGCAGTGCCCTGGACCAGAGAACTATCGAACCCG |
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| Motif Score | 3.62240476190476 | |||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
(((....))).(((...)))........... |
MFE | -2.10 | |||||||||||||||||||||||||||||||||
| Support Dataset Num | 10 | Support sub-Dataset Num | 20 | |||||||||||||||||||||||||||||||||
| Support Dataset List | ||||||||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2991403, GSM2987447, GSM2987448, GSM2987449, GSM3396437, GSM3396438, GSM3582046, GSM3582047, GSM1166139, GSM1272360, GSM2283210, GSM2417477, GSM2417478, GSM2417479, GSM2460345, GSM2460350, GSM2754211, GSM2754213, GSM2754235, GSM2464931 |
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| Cell/Tissue List |
HeLa, HepG2, HEK293T, U2OS, H1B, Jurkat, HEK293A-TOA, iSLK, HEC-1-A |
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| Seq Type List | m6A-seq,MeRIP-seq | |||||||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000476544.1,ENST00000443878.1,ENST00000412966.5,ENST00000446547.5,ENST00000422242.1,ENST00000273047.9 | |||||||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | na | |||||||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1