Details of RNA Modification Site of hg38
mod ID m6A_site_581262 mod Site chr3:30688452-30688453:+
mod Type m6A Sequence CTGTGTCGAAAGCATGAAGGACAACGTGTTGAGAGATCGAG
Motif Score 3.64304761904762
RNA Structure Motif ((...((((((........))))))..))..
 MFE -5.20
Support Dataset Num 4 Support sub-Dataset Num 12
Support Dataset List
Support sub-Dataset List

GSM2739503, GSM2739522, GSM2739523, GSM2739534, GSM2739535, GSM2884195, GSM2884197, GSM1908206, GSM1908212, GSM2464911, GSM2464917, GSM2464919
Cell/Tissue List HeLa, CD34, MT4, endometrial
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000359013.4,ENST00000295754.9
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000359013.4ENSG00000163513.17TGFBR2protein_codingcds-7
ENST00000295754.9ENSG00000163513.17TGFBR2protein_codingcds-6
Conserved Sites mm10:m6A_site_651191
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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