| mod ID | m6A_site_586835 | mod Site | chr3:46903412-46903413:+ | ||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
AATGTCGGCCCCCGTGTGGGACTCGGCCTGCCCCTCAGCCC |
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| Motif Score | 4.06504166666667 | ||||||||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
.(((((((....)))....))))........ |
MFE | -10.30 | ||||||||||||||||||||||||||||||||||||||
| Support Dataset Num | 3 | Support sub-Dataset Num | 26 | ||||||||||||||||||||||||||||||||||||||
| Support Dataset List | GSE90914, GSE93676, GSE93911 | ||||||||||||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2417477, GSM2417478, GSM2417479, GSM2460345, GSM2460350, GSM2460352, GSM2754211, GSM2754213, GSM2754214, GSM2754216, GSM2754226, GSM2754235, GSM2754237, GSM2754238, GSM2754240, GSM2464901, GSM2464905, GSM2464907, GSM2464909, GSM2464911, GSM2464913, GSM2464915, GSM2464921, GSM2464923, GSM2464927, GSM2464931 |
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| Cell/Tissue List |
HEK293A-TOA, iSLK, MSC, TREX, endometrial, HEC-1-A |
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| Seq Type List | m6A-seq,MeRIP-seq | ||||||||||||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000449590.6,ENST00000313049.9,ENST00000427125.6,ENST00000422115.2,ENST00000418619.5,ENST00000428220.1,ENST00000430002.6 | ||||||||||||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | mm10:m6A_site_649630;susScr11:m6A_site_30429 | ||||||||||||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||||||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | ||||||||||||||||||||||||||||||||||||||||
| PubMed ID | 28525753, 29109479, 30154548 |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1