| mod ID | m6A_site_587034 | mod Site | chr3:47083738-47083739:- | |||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
TTTGGCCACCAAACTCCTGGACAGTTGGAAAGACCTAAAGG |
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| Motif Score | 3.64304761904762 | |||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
((((((......))).....)))........ |
MFE | -2.50 | |||||||||||||||||||||||||||||||||
| Support Dataset Num | 9 | Support sub-Dataset Num | 23 | |||||||||||||||||||||||||||||||||
| Support Dataset List | ||||||||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739502, GSM2739503, GSM2991403, GSM2884195, GSM2884197, GSM2884199, GSM3396437, GSM3396438, GSM928399, GSM1339393, GSM1339403, GSM1339407, GSM1339427, GSM1723347, GSM1723349, GSM1723351, GSM1982263, GSM2010454, GSM2203052, GSM2203056, GSM2203060, GSM2203063, GSM2203064 |
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| Cell/Tissue List |
HeLa, CD34, HEK293T, hNPCs, fibroblasts, A549, LCLs, H1299, MM6, Huh7 |
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| Seq Type List | m6A-seq,MeRIP-seq | |||||||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000638947.1,ENST00000330022.11,ENST00000409792.3,ENST00000445387.5,ENST00000431180.5,ENST00000492397.1 | |||||||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | mm10:m6A_site_649482;panTro5:m6A_site_45728;rheMac8:m6A_site_33566 | |||||||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1