| mod ID | m6A_site_59048 | mod Site | chr1:156743084-156743085:- | |||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
CACTCTCCTAGGCATTCTGGACCTCTGGGTTGGGATCAGGG |
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| Motif Score | 3.62240476190476 | |||||||||||||||||||||||||
| RNA Structure Motif |
..........(((.((((....)))).))). |
MFE | -7.70 | |||||||||||||||||||||||
| Support Dataset Num | 10 | Support sub-Dataset Num | 31 | |||||||||||||||||||||||
| Support Dataset List | ||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739534, GSM2739535, GSM2991399, GSM2991400, GSM908331, GSM1135032, GSM1272358, GSM1272360, GSM1272362, GSM1272366, GSM1272368, GSM1908206, GSM1908208, GSM1908210, GSM1908212, GSM1982257, GSM2324292, GSM2324298, GSM2324308, GSM2324310, GSM2332985, GSM2332987, GSM2332988, GSM2332990, GSM2464905, GSM2464907, GSM2464913, GSM2464919, GSM2464921, GSM2564019, GSM2564022 |
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| Cell/Tissue List |
HeLa, HepG2, H1A, H1B, MT4, A549, peripheral-blood, HEK293T, endometrial, NB4, MM6 |
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| Seq Type List | m6A-seq,MeRIP-seq | |||||||||||||||||||||||||
| Transcript ID List | ENST00000465180.5,ENST00000357325.10,ENST00000537739.5,ENST00000368209.9 | |||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | mm10:m6A_site_387801 | |||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1