Details of RNA Modification Site of hg38
mod ID m6A_site_591571 mod Site chr3:50185450-50185451:+
mod Type m6A Sequence GGCCCGTTCCAGACCGCGGGACAGTGCAGAAGGTCATTGTG
Motif Score 3.64304761904762
RNA Structure Motif ......(((((((......)))....)))).
 MFE -6.30
Support Dataset Num 2 Support sub-Dataset Num 3
Support Dataset List GSE102493, GSE93911
Support sub-Dataset List

GSM2991400, GSM2464909, GSM2464911
Cell/Tissue List HeLa, endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000434342.5,ENST00000470737.1,ENST00000002829.8,ENST00000413852.5
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000434342.5ENSG00000001617.12SEMA3Fprotein_codingcds-13
ENST00000470737.1ENSG00000001617.12SEMA3Fretained_intronexon-2
ENST00000002829.8ENSG00000001617.12SEMA3Fprotein_codingcds-14
ENST00000413852.5ENSG00000001617.12SEMA3Fprotein_codingcds-13
Conserved Sites mm10:m6A_site_646443
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 29507755, 30154548

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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