Details of RNA Modification Site of hg38
mod ID m6A_site_60815 mod Site chr1:160997912-160997913:-
mod Type m6A Sequence TCACCCTTCCCTTGGCTGGAACTACTGGACAGACCCTTTTG
Motif Score 3.37338095238095
RNA Structure Motif ........(((((...(....)..))).)).
 MFE -4.20
Support Dataset Num 4 Support sub-Dataset Num 12
Support Dataset List
Support sub-Dataset List

GSM2739506, GSM2739507, GSM2991403, GSM2987447, GSM2987448, GSM2010454, GSM2464905, GSM2464913, GSM2464919, GSM2464921, GSM2464927, GSM2464931
Cell/Tissue List

HeLa, HepG2, MM6, endometrial, HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000368026.11,ENST00000621309.4
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000368026.11ENSG00000158769.18F11Rprotein_codingutr3-10
ENST00000621309.4ENSG00000158769.18F11Rprotein_codingutr3-11
Conserved Sites mm10:m6A_site_36690
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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