| mod ID | m6A_site_614382 | mod Site | chr3:149669823-149669824:- | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
CTGCTTCCTGGTGGATCTGAACTGACCCATAAGCCACGCTT |
||||||||||||||||||
| Motif Score | 3.37338095238095 | ||||||||||||||||||||
| RNA Structure Motif |
..((.((((.((......)).)))).))... |
MFE | -5.60 | ||||||||||||||||||
| Support Dataset Num | 1 | Support sub-Dataset Num | 2 | ||||||||||||||||||
| Support Dataset List | GSE102493 | ||||||||||||||||||||
| Support sub-Dataset List | GSM2739506, GSM2991403 | ||||||||||||||||||||
| Cell/Tissue List | HeLa | ||||||||||||||||||||
| Seq Type List | m6A-seq | ||||||||||||||||||||
| Transcript ID List | rmsk_1129203,ENST00000465804.5,ENST00000475579.1 | ||||||||||||||||||||
| Transcript Detail |
|
||||||||||||||||||||
| Conserved Sites | na | ||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||||||||||||
| Writer Catalysis Detail | na | ||||||||||||||||||||
| PubMed ID | 29507755 |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
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School of Life Science,
Sun Yat-sen University, China.
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