| mod ID | m6A_site_621255 | mod Site | chr3:184581578-184581579:+ | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
GATCCTGAGCAGTATCCAGGACATGCGGCTGCAGATGAACC |
||||||||
| Motif Score | 3.64304761904762 | ||||||||||
| RNA Structure Motif |
...(((((...((.....))..))))).... |
MFE | -6.40 | ||||||||
| Support Dataset Num | 10 | Support sub-Dataset Num | 26 | ||||||||
| Support Dataset List | |||||||||||
| Support sub-Dataset List |
GSM2739522, GSM2739535, GSM928403, GSM1272360, GSM1272362, GSM1272364, GSM1272366, GSM1272368, GSM1339439, GSM2010456, GSM2324308, GSM2332975, GSM2332977, GSM2332978, GSM2417477, GSM2417478, GSM2417479, GSM2464905, GSM2464907, GSM2464909, GSM2464911, GSM2464913, GSM2464915, GSM2464921, GSM2464923, GSM2483505 |
||||||||||
| Cell/Tissue List |
HeLa, HEK293T, H1B, H1A, A549, MM6, peripheral-blood, GSC-11, HEK293A-TOA, endometrial, GSCs |
||||||||||
| Seq Type List | m6A-seq,MeRIP-seq | ||||||||||
| Transcript ID List | ENST00000330394.3 | ||||||||||
| Transcript Detail |
|
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| Conserved Sites | mm10:m6A_site_234137;rn6:m6A_site_24241;susScr11:m6A_site_34587 | ||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||
| snoRNA Guide Detail | na | ||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||
| Writer Catalysis Detail | na | ||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1