| mod ID | m6A_site_621772 | mod Site | chr3:185645389-185645390:- | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
GTCTGCGGAGGCGGCCAGGGACTCTGCCGAGGCCCTGAGAA |
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| Motif Score | 4.06504166666667 | ||||||||||||||||||||
| RNA Structure Motif |
....((.((((..((......))..)))))) |
MFE | -10.90 | ||||||||||||||||||
| Support Dataset Num | 21 | Support sub-Dataset Num | 80 | ||||||||||||||||||
| Support Dataset List | |||||||||||||||||||||
| Support sub-Dataset List |
GSM2739506, GSM2739507, GSM2739522, GSM2739523, GSM2739534, GSM2739535, GSM2991403, GSM2884195, GSM2884197, GSM2884199, GSM2987447, GSM2987448, GSM2987449, GSM3083806, GSM3396438, GSM3582046, GSM3582047, GSM3582052, GSM3582053, GSM3900734, GSM928399, GSM928401, GSM928403, GSM1135021, GSM1166140, GSM1272358, GSM1272360, GSM1272362, GSM1272364, GSM1272366, GSM1272368, GSM1339393, GSM1339395, GSM1339401, GSM1339403, GSM1339405, GSM1339407, GSM1339425, GSM1339427, GSM1982263, GSM2010454, GSM2010456, GSM2203043, GSM2203044, GSM2203047, GSM2203051, GSM2203052, GSM2203055, GSM2203056, GSM2203059, GSM2203060, GSM2324292, GSM2324298, GSM2324308, GSM2332975, GSM2332977, GSM2332978, GSM2460345, GSM2460347, GSM2460348, GSM2460350, GSM2460352, GSM2460354, GSM2460356, GSM2460360, GSM2460362, GSM2754211, GSM2754220, GSM2754222, GSM2754235, GSM2754244, GSM2754246, GSM2754248, GSM2464907, GSM2464921, GSM2464927, GSM2464931, GSM2483505, GSM2564019, GSM2564022 |
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| Cell/Tissue List |
HeLa, CD34, HepG2, HEK293T, A549, BGC823, U2OS, H1A, H1B, hNPCs, hESCs, fibroblasts, H1299, MM6, Huh7, peripheral-blood, GSC-11, iSLK, MSC, TIME, TREX, endometrial, HEC-1-A, GSCs, NB4 |
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| Seq Type List | m6A-seq,MeRIP-seq | ||||||||||||||||||||
| Transcript ID List | ENST00000346192.7,ENST00000382199.6,ENST00000457616.6 | ||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | na | ||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||||||||||||
| Writer Catalysis Detail | na | ||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1