| mod ID | m6A_site_625322 | mod Site | chr3:197700867-197700868:- | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
ACTTGGACCCCCGAGGCCGGACTGCCAGCTGTCAGAGTCAC |
||||||||||||||||||||||||||||
| Motif Score | 4.06504166666667 | ||||||||||||||||||||||||||||||
| RNA Structure Motif |
(((......(((.((....)).))))))... |
MFE | -5.40 | ||||||||||||||||||||||||||||
| Support Dataset Num | 11 | Support sub-Dataset Num | 39 | ||||||||||||||||||||||||||||
| Support Dataset List | |||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739506, GSM2739507, GSM2739523, GSM2739534, GSM2739535, GSM2991403, GSM3396437, GSM3396438, GSM1272360, GSM1272368, GSM1339405, GSM1339429, GSM1594131, GSM1723347, GSM1828596, GSM2283210, GSM2283211, GSM2283212, GSM2283213, GSM2283214, GSM2283215, GSM2417477, GSM2417478, GSM2417479, GSM2460345, GSM2460347, GSM2460352, GSM2460354, GSM2460358, GSM2460360, GSM2754213, GSM2754214, GSM2754216, GSM2754220, GSM2754235, GSM2754237, GSM2754240, GSM2754244, GSM2464931 |
||||||||||||||||||||||||||||||
| Cell/Tissue List |
HeLa, HEK293T, H1B, fibroblasts, A549, GM12878, LCLs, Jurkat, CD4T, HEK293A-TOA, iSLK, MSC, TIME, TREX, HEC-1-A |
||||||||||||||||||||||||||||||
| Seq Type List | m6A-seq,MeRIP-seq,m6A-CLIP/IP | ||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000296343.10,ENST00000415452.5,ENST00000449205.1,ENST00000413360.5,ENST00000273582.9 | ||||||||||||||||||||||||||||||
| Transcript Detail |
|
||||||||||||||||||||||||||||||
| Conserved Sites | mm10:m6A_site_237217;rheMac8:m6A_site_35468;rn6:m6A_site_23902 | ||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | ||||||||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1