Details of RNA Modification Site of hg38
mod ID m6A_site_627438 mod Site chr4:1727859-1727860:+
mod Type m6A Sequence AGGTGCCCTGGCTGACCTGGACTGCTCAAGCTCTTCCCAGA
Motif Score 4.06504166666667
RNA Structure Motif ....((((((.(......).)).))))....
 MFE -3.80
Support Dataset Num 10 Support sub-Dataset Num 18
Support Dataset List
Support sub-Dataset List

GSM2739502, GSM2739503, GSM2739522, GSM2739534, GSM2991400, GSM2884195, GSM2884197, GSM2987447, GSM1135020, GSM1135021, GSM1135032, GSM1135033, GSM2010454, GSM2324298, GSM2332990, GSM2464913, GSM2564019, GSM2602070
Cell/Tissue List

HeLa, CD34, HepG2, MM6, peripheral-blood, HEK293T, endometrial, NB4, AML
Seq Type List m6A-seq,miCLIP
Transcript ID List ENST00000484651.5,ENST00000493975.5,ENST00000458173.4,ENST00000467746.6,ENST00000612220.4,ENST00000651472.1,ENST00000650779.1,ENST00000652770.1,ENST00000651251.1,ENST00000485989.6,ENST00000313288.9,ENST00000617535.4
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000484651.5ENSG00000013810.19TACC3retained_intronexon-4
ENST00000493975.5ENSG00000013810.19TACC3protein_codingcds-4
ENST00000458173.4ENSG00000013810.19TACC3protein_codingcds-4
ENST00000467746.6ENSG00000013810.19TACC3nonsense_mediated_decayutr3-4
ENST00000612220.4ENSG00000013810.19TACC3protein_codingintron-3
ENST00000651472.1ENSG00000013810.19TACC3protein_codingcds-4
ENST00000650779.1ENSG00000013810.19TACC3retained_intronexon-1
ENST00000652770.1ENSG00000013810.19TACC3protein_codingcds-4
ENST00000651251.1ENSG00000013810.19TACC3processed_transcriptexon-4
ENST00000485989.6ENSG00000013810.19TACC3protein_codingintron-3
ENST00000313288.9ENSG00000013810.19TACC3protein_codingcds-4
ENST00000617535.4ENSG00000013810.19TACC3protein_codingintron-3
Conserved Sites rheMac8:m6A_site_45140
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 1 Writer Name List METTL3
Writer Catalysis Detail

Writer Name Writer ID Writer Binding Site Source
METTL3METTL3:CH9068chr4:1727847-1727860SBDH174-5264
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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