Details of RNA Modification Site of hg38
mod ID m6A_site_637842 mod Site chr4:54290334-54290335:+
mod Type m6A Sequence TTATGAAAAAATTCACCTGGACTTCCTGAAGAGTGACCATC
Motif Score 4.06504166666667
RNA Structure Motif .......((((((((....))...)).))))
 MFE -3.50
Support Dataset Num 3 Support sub-Dataset Num 8
Support Dataset List GSE48037, GSE93676, GSE93911
Support sub-Dataset List

GSM1166139, GSM1166141, GSM2460352, GSM2460354, GSM2464907, GSM2464911, GSM2464917, GSM2464919
Cell/Tissue List U2OS, MSC, endometrial
Seq Type List MeRIP-seq,m6A-seq
Transcript ID List ENST00000257290.10,ENST00000507166.5
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000257290.10ENSG00000134853.12PDGFRAprotein_codingcds-22
ENST00000507166.5ENSG00000282278.1AC058822.1protein_codingcds-23
Conserved Sites mm10:m6A_site_465451;rn6:m6A_site_32944;susScr11:m6A_site_129916
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 24209618, 29109479, 30154548

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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