| mod ID | m6A_site_642202 | mod Site | chr4:82373539-82373540:- | |||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
CGGCGGGAAGCGGAGCCGGGACCGGGGGCGGAACCGCGTCT |
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| Motif Score | 3.62240476190476 | |||||||||||||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
...........(((..(((....)))..))) |
MFE | -8.80 | |||||||||||||||||||||||||||||||||||||||||||
| Support Dataset Num | 18 | Support sub-Dataset Num | 57 | |||||||||||||||||||||||||||||||||||||||||||
| Support Dataset List | ||||||||||||||||||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739522, GSM2739523, GSM2739534, GSM2739535, GSM2884195, GSM2884197, GSM2884199, GSM2987447, GSM2987448, GSM2987449, GSM3083805, GSM3083806, GSM3083809, GSM3083810, GSM3582053, GSM3582054, GSM908331, GSM1166139, GSM1166141, GSM1166143, GSM1166144, GSM1272360, GSM1272362, GSM1272364, GSM1272368, GSM1339439, GSM1908206, GSM1908208, GSM1908210, GSM1908212, GSM1982257, GSM1982263, GSM2010454, GSM2010456, GSM2203047, GSM2283210, GSM2283211, GSM2283213, GSM2283214, GSM2332975, GSM2332977, GSM2332978, GSM2332985, GSM2332986, GSM2332987, GSM2332988, GSM2332989, GSM2332990, GSM2460352, GSM2754213, GSM2754214, GSM2754238, GSM2754240, GSM2754244, GSM2754248, GSM2564019, GSM2564022 |
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| Cell/Tissue List |
HeLa, CD34, HepG2, A549, U2OS, H1B, H1A, MT4, H1299, MM6, Huh7, Jurkat, CD4T, GSC-11, HEK293T, MSC, iSLK, TIME, NB4 |
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| Seq Type List | m6A-seq,MeRIP-seq | |||||||||||||||||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000515432.1,ENST00000313899.12,ENST00000353341.8,ENST00000352301.8,ENST00000509107.1,ENST00000513584.1,ENST00000507010.5,ENST00000503822.1 | |||||||||||||||||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | susScr11:m6A_site_132680 | |||||||||||||||||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||||||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||||||||||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1